Structural Graph Alignment for JAK2 and Urban Safety Models
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Keywords

artificial intelligence

Abstract

This review examines structural graph alignment for kinase and urban-safety models through an evidence-centered design lens. The analysis asks which structural differences should block transfer. It treats the relevant unit as a complete pathway from data or physical observations to representation, model output, human interpretation, and accountable action. The cited literature is synthesized without inventing experiments or unreported performance values. Particular attention is given to alignment erasing functionally important variation. The review argues that credible translation requires explicit evidence boundaries, uncertainty-aware evaluation, author-visible traceability, and a documented route for intervention. The resulting framework supports drug discovery and autonomous systems while distinguishing component promise from system readiness.

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References

Beard, R. W., & McLain, T. W. (2012). Small unmanned aircraft: Theory and practice. Princeton University Press.

Bengio, Y., Louradour, J., Collobert, R., & Weston, J. (2009). Curriculum learning. In Proceedings of the 26th International Conference on Machine Learning (pp. 41-48).

Berman, H. M., Westbrook, J., Feng, Z., Gilliland, G., Bhat, T. N., Weissig, H., Shindyalov, I. N., & Bourne, P. E. (2000). The Protein Data Bank. Nucleic Acids Research, 28(1), 235-242. https://doi.org/10.1093/nar/28.1.235

Deng, H., Luo, H., Zhu, Y., Li, L., Chen, Z., Zhao, X., Li, M., Zhang, J., Wang, M., Cao, Y., & Kang, Y. (2026). IIB-LPO: Latent policy optimization via iterative information bottleneck. arXiv preprint arXiv:2601.05870.

Fang, R., Zhao, J., Wang, S., Pu, R., Li, B., Cai, J., ... & Wang, B. (2025). Saga: Structural aggregation guided alignment with dynamic view and neighborhood order selection for multiview graph domain adaptation. In The Fourteenth International Conference on Learning Representations.

Jumper, J., Evans, R., Pritzel, A., Green, T., Figurnov, M., Ronneberger, O., Tunyasuvunakool, K., Bates, R., Žídek, A., Potapenko, A., Bridgland, A., Meyer, C., Kohl, S. A. A., Ballard, A. J., Cowie, A., Romera-Paredes, B., Nikolov, S., Jain, R., Adler, J., ... & Hassabis, D. (2021). Highly accurate protein structure prediction with AlphaFold. Nature, 596, 583-589. https://doi.org/10.1038/s41586-021-03819-2

Kendoul, F. (2012). Survey of advances in guidance, navigation, and control of unmanned rotorcraft systems. Journal of Field Robotics, 29(2), 315-378. https://doi.org/10.1002/rob.20414

Miao, Y., Mykuliak, V. V., Hubbard, S. R., Silvennoinen, O., Hytönen, V., & Haikarainen, T. (2026). Janus kinase 2 activation loop as a regulator of catalysis and trans-activation. International Journal of Biological Macromolecules, 153276.

Schulman, J., Wolski, F., Dhariwal, P., Radford, A., & Klimov, O. (2017). Proximal policy optimization algorithms. arXiv preprint arXiv:1707.06347.

Vaswani, A., Shazeer, N., Parmar, N., Uszkoreit, J., Jones, L., Gomez, A. N., Kaiser, Ł., & Polosukhin, I. (2017). Attention is all you need. Advances in Neural Information Processing Systems, 30.